α-Helix in Cystathionine β-Synthase Enzyme Acts as an Electron Reservoir

J Phys Chem B. 2022 Jul 7;126(26):4754-4760. doi: 10.1021/acs.jpcb.2c01657. Epub 2022 Jun 10.

Abstract

The modulation of electron density at the Pyridoxal 5'-phosphate (PLP) catalytic center, because of charge transfer across the α-helix/PLP interface, is the determining factor for the enzymatic activities in the human Cystathionine β-Synthase (hCBS) enzyme. Applying density functional theory calculations, in conjunction with the real space density analysis, we investigated the charge density delocalization across the entire heme-α-helix-PLP electron communication channels. The electron delocalization due to hydrogen bonds at the heme/α-helix and α-helix/PLP interfaces are found to be extended over a very long range, as a result of redistribution of electron densities of the cofactors. Moreover, the internal hydrogen bonds of α-helix that are crucial for its secondary structure also participate in the electron redistribution through the structured hydrogen-bond network. α-Helix is found to accumulate the electron density at the ground state from both of the cofactors and behaves as an electron reservoir for catalytic reaction at the electrophilic center of PLP.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cystathionine beta-Synthase* / chemistry
  • Cystathionine beta-Synthase* / metabolism
  • Electrons*
  • Heme / chemistry
  • Humans
  • Protein Conformation, alpha-Helical
  • Pyridoxal Phosphate / chemistry

Substances

  • Heme
  • Pyridoxal Phosphate
  • Cystathionine beta-Synthase