Clinical exome sequencing for inherited retinal degenerations at a tertiary care center

Sci Rep. 2022 Jun 7;12(1):9358. doi: 10.1038/s41598-022-13026-2.

Abstract

Inherited retinal degenerations are clinically and genetically heterogeneous diseases characterized by progressive deterioration of vision. This study aimed at assessing the diagnostic yield of exome sequencing (ES) for an unselected cohort of individuals with hereditary retinal disorders. It is a retrospective study of 357 unrelated affected individuals, diagnosed with retinal disorders who underwent clinical ES. Variants from ES were filtered, prioritized, and classified using the ACMG recommendations. Clinical diagnosis of the individuals included rod-cone dystrophy (60%), macular dystrophy (20%), cone-rod dystrophy (9%), cone dystrophy (4%) and other phenotypes (7%). Majority of the cases (74%) were singletons and 6% were trios. A confirmed molecular diagnosis was obtained in 24% of cases. In 6% of cases, two pathogenic variants were identified with phase unknown, bringing the potential molecular diagnostic rate to ~ 30%. Including the variants of uncertain significance (VUS), potentially significant findings were reported in 57% of cases. Among cases with a confirmed molecular diagnosis, variants in EYS, ABCA4, USH2A, KIZ, CERKL, DHDDS, PROM1, NR2E3, CNGB1, ABCC6, PRPH2, RHO, PRPF31, PRPF8, SNRNP200, RP1, CHM, RPGR were identified in more than one affected individual. Our results support the utility of clinical ES in the diagnosis of genetically heterogeneous retinal disorders.

MeSH terms

  • ATP-Binding Cassette Transporters / genetics
  • Cell Cycle Proteins
  • Cone-Rod Dystrophies* / diagnosis
  • Cone-Rod Dystrophies* / genetics
  • Cyclic Nucleotide-Gated Cation Channels / genetics
  • DNA Mutational Analysis
  • Exome / genetics
  • Eye Proteins / genetics
  • Humans
  • Mutation
  • Pedigree
  • Phenotype
  • Retinal Dystrophies* / diagnosis
  • Retinal Dystrophies* / genetics
  • Retrospective Studies
  • Tertiary Care Centers

Substances

  • ABCA4 protein, human
  • ATP-Binding Cassette Transporters
  • CNGB1 protein, human
  • Cell Cycle Proteins
  • Cyclic Nucleotide-Gated Cation Channels
  • EYS protein, human
  • Eye Proteins
  • KIZ protein, human
  • RPGR protein, human