Identification and characterization of a prokaryotic 6-4 photolyase from Synechococcus elongatus with a deazariboflavin antenna chromophore

Nucleic Acids Res. 2022 Jun 10;50(10):5757-5771. doi: 10.1093/nar/gkac416.

Abstract

Synechococcus elongatus, formerly known as Anacystis nidulans, is a representative species of cyanobacteria. It is also a model organism for the study of photoreactivation, which can be fully photoreactivated even after receiving high UV doses. However, for a long time, only one photolyase was found in S. elongatus that is only able to photorepair UV induced cyclobutane pyrimidine dimers (CPDs) in DNA. Here, we characterize another photolyase in S. elongatus, which belongs to iron-sulfur bacterial cryptochromes and photolyases (FeS-BCP), a subtype of prokaryotic 6-4 photolyases. This photolyase was named SePhrB that could efficiently photorepair 6-4 photoproducts in DNA. Chemical analyses revealed that SePhrB contains a catalytic FAD cofactor and an iron-sulfur cluster. All of previously reported FeS-BCPs contain 6,7-dimethyl-8-ribityllumazine (DMRL) as their antenna chromophores. Here, we first demonstrated that SePhrB possesses 7,8-didemethyl-8-hydroxy-5-deazariboflavin (8-HDF) as an antenna chromophore. Nevertheless, SePhrB could be photoreduced without external electron donors. After being photoreduced, the reduced FAD cofactor in SePhrB was extremely stable against air oxidation. These results suggest that FeS-BCPs are more diverse than expected which deserve further investigation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA / chemistry
  • DNA Repair
  • Deoxyribodipyrimidine Photo-Lyase* / metabolism
  • Flavin-Adenine Dinucleotide / metabolism
  • Iron
  • Pyrimidine Dimers / chemistry
  • Sulfur
  • Synechococcus
  • Ultraviolet Rays

Substances

  • Pyrimidine Dimers
  • Flavin-Adenine Dinucleotide
  • Sulfur
  • DNA
  • Iron
  • Deoxyribodipyrimidine Photo-Lyase

Supplementary concepts

  • Synechococcus elongatus