The Shigella Spp. Type III Effector Protein OspB Is a Cysteine Protease

mBio. 2022 Jun 28;13(3):e0127022. doi: 10.1128/mbio.01270-22. Epub 2022 May 31.

Abstract

The type III secretion system is required for virulence of many pathogenic bacteria. Bacterial effector proteins delivered into target host cells by this system modulate host signaling pathways and processes in a manner that promotes infection. Here, we define the activity of the effector protein OspB of the human pathogen Shigella spp., the etiological agent of shigellosis and bacillary dysentery. Using the yeast Saccharomyces cerevisiae as a model organism, we show that OspB sensitizes cells to inhibition of TORC1, the central regulator of growth and metabolism. In silico analyses reveal that OspB bears structural homology to bacterial cysteine proteases that target mammalian cell processes, and we define a conserved cysteine-histidine catalytic dyad required for OspB function. Using yeast genetic screens, we identify a crucial role for the arginine N-degron pathway in the yeast growth inhibition phenotype and show that inositol hexakisphosphate is an OspB cofactor. We find that a yeast substrate for OspB is the TORC1 component Tco89p, proteolytic cleavage of which generates a C-terminal fragment that is targeted for degradation via the arginine N-degron pathway; processing and degradation of Tco89p is required for the OspB phenotype. In all, we demonstrate that the Shigella T3SS effector OspB is a cysteine protease and decipher its interplay with eukaryotic cell processes. IMPORTANCEShigella spp. are important human pathogens and among the leading causes of diarrheal mortality worldwide, especially in children. Virulence depends on the Shigella type III secretion system (T3SS). Definition of the roles of the bacterial effector proteins secreted by the T3SS is key to understanding Shigella pathogenesis. The effector protein OspB contributes to a range of phenotypes during infection, yet the mechanism of action is unknown. Here, we show that S. flexneri OspB possesses cysteine protease activity in both yeast and mammalian cells, and that enzymatic activity of OspB depends on a conserved cysteine-histidine catalytic dyad. We determine how its protease activity sensitizes cells to TORC1 inhibition in yeast, finding that OspB cleaves a component of yeast TORC1, and that the degradation of the C-terminal cleavage product is responsible for OspB-mediated hypersensitivity to TORC1 inhibitors. Thus, OspB is a cysteine protease that depends on a conserved cysteine-histidine catalytic dyad.

Keywords: OspB; Shigella; TORC1; Tco89p; catalytic dyad; cysteine protease; inositol hexakisphosphate.

MeSH terms

  • Animals
  • Arginine / metabolism
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Cysteine / metabolism
  • Cysteine Proteases* / genetics
  • Cysteine Proteases* / metabolism
  • Dysentery, Bacillary*
  • Histidine / metabolism
  • Mammals / metabolism
  • Mechanistic Target of Rapamycin Complex 1
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism
  • Shigella flexneri / metabolism
  • Shigella* / physiology
  • Type III Secretion Systems / genetics
  • Type III Secretion Systems / metabolism

Substances

  • Bacterial Proteins
  • Type III Secretion Systems
  • Histidine
  • Arginine
  • Mechanistic Target of Rapamycin Complex 1
  • Cysteine Proteases
  • Cysteine