A Genome-Wide Association Study Identifying Single-Nucleotide Polymorphisms for Iron and Zinc Biofortification in a Worldwide Barley Collection

Plants (Basel). 2022 May 19;11(10):1349. doi: 10.3390/plants11101349.

Abstract

Micronutrient deficiency affects half of the world’s population, mostly in developing countries. Severe health issues such as anemia and inadequate growth in children below five years of age and pregnant women have been linked to mineral deficiencies (mostly zinc and iron). Improving the mineral content in staple crops, also known as mineral biofortification, remains the best approach to address mineral malnutrition. Barley is a staple crop in some parts of the world and is a healthy choice since it contains β-glucan, a high dietary protein. Barley mineral biofortification, especially with zinc and iron, can be beneficial since barley easily adapts to marginalized areas and requires less input than other frequently consumed cereals. In this study, we analyzed zinc and iron content in 496 barley samples. The samples were genotyped with an Illumina 50 K SNP chip. Genome-wide association studies (GWAS) identified 62 SNPs and 68 SNPs (p < 0.001) associated with iron and zinc content in grains, respectively. After a Bonferroni correction (p < 0.005), there were 12 SNPs (single-nucleotide polymorphism) associated with Zn and 6 for iron. SNP annotations revealed proteins involved in membrane transport, Zn and Fe binding, linked to nutrient remobilization in grains. These results can be used to develop biofortified barley via marker-assisted selection (MAS), which could alleviate mineral malnutrition.

Keywords: GWAS; Hordeum vulgare L.; SNP; association mapping; barley; biofortification; iron; micronutrients; zinc.

Grants and funding

This research was supported by ICARDA/Moroccan Collaborative Grants Program (MCGP) and FAO/ITPGRFA funded project (grant# W3B-PR-21/Morocco) on ‘In vitro culture and genomics-assisted fast track improvement of local landraces of wheat and barley in Morocco, Tunisia and Algeria for enhancing food security and adaptation to climate change’.