Introduction of the T315I gatekeeper mutation of BCR/ABL1 into a Philadelphia chromosome-positive lymphoid leukemia cell line using the CRISPR/Cas9 system

Int J Hematol. 2022 Oct;116(4):534-543. doi: 10.1007/s12185-022-03369-x. Epub 2022 May 6.

Abstract

Imatinib and second-generation tyrosine kinase inhibitors (TKIs) have dramatically improved the prognosis of Philadelphia chromosome-positive (Ph+) acute lymphoblastic leukemia (ALL). However, overcoming TKI resistance due to the T315I gatekeeper mutation of BCR/ABL1 is crucial for further improving the prognosis. The clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 system is appropriate for establishing a human model of Ph+ ALL with the T315I mutation, because it can induce specific mutations via homologous recombination (HR) repair in cells with intact endogenous HR pathway. Here we used CRISPR/Cas9 to introduce the T315I mutation into the Ph+ lymphoid leukemia cell line KOPN55bi, which appeared to have an active HR pathway based on its resistance to a poly (ADP-Ribose) polymerase-1 inhibitor. Single-guide RNA targeting at codon 315 and single-strand oligodeoxynucleotide containing ACT to ATT nucleotide transition at codon 315 were electroporated with recombinant Cas9 protein. Dasatinib-resistant sublines were obtained after one-month selection with the therapeutic concentration of dasatinib, leading to T315I mutation acquisition through HR. T315I-acquired sublines were highly resistant to imatinib and second-generation TKIs but moderately sensitive to the therapeutic concentration of ponatinib. This authentic human model is helpful for developing new therapeutic strategies overcoming TKI resistance in Ph+ ALL due to T315I mutation.

Keywords: Acute lymphoblastic leukemia; Genome editing; Philadelphia chromosome; T315I mutation; Tyrosine kinase inhibitors (TKIs).

MeSH terms

  • Antineoplastic Agents* / therapeutic use
  • CRISPR-Associated Protein 9 / genetics
  • CRISPR-Associated Protein 9 / metabolism
  • CRISPR-Cas Systems
  • Cell Line
  • Dasatinib / therapeutic use
  • Drug Resistance, Neoplasm / genetics
  • Fusion Proteins, bcr-abl
  • Humans
  • Imatinib Mesylate / pharmacology
  • Imatinib Mesylate / therapeutic use
  • Leukemia, Myelogenous, Chronic, BCR-ABL Positive* / drug therapy
  • Mutation
  • Nucleotides / therapeutic use
  • Oligodeoxyribonucleotides / therapeutic use
  • Philadelphia Chromosome
  • Poly (ADP-Ribose) Polymerase-1 / genetics
  • Poly (ADP-Ribose) Polymerase-1 / metabolism
  • Precursor Cell Lymphoblastic Leukemia-Lymphoma* / drug therapy
  • Precursor Cell Lymphoblastic Leukemia-Lymphoma* / genetics
  • Protein Kinase Inhibitors / pharmacology
  • Protein Kinase Inhibitors / therapeutic use
  • RNA, Guide, CRISPR-Cas Systems / therapeutic use

Substances

  • Antineoplastic Agents
  • Nucleotides
  • Oligodeoxyribonucleotides
  • Protein Kinase Inhibitors
  • RNA, Guide, CRISPR-Cas Systems
  • Imatinib Mesylate
  • Poly (ADP-Ribose) Polymerase-1
  • Fusion Proteins, bcr-abl
  • CRISPR-Associated Protein 9
  • Dasatinib