Laser osteotomy promises precise cutting and minor bone tissue damage. We proposed Optical Coherence Tomography (OCT) to monitor the ablation process toward our smart laser osteotomy approach. The OCT image is helpful to identify tissue type and provide feedback for the ablation laser to avoid critical tissues such as bone marrow and nerve. Furthermore, in the implementation, the tissue classifier's accuracy is dependent on the quality of the OCT image. Therefore, image denoising plays an important role in having an accurate feedback system. A common OCT image denoising technique is the frame-averaging method. Inherent to this method is the need for multiple images, i.e., the more images used, the better the resulting image quality. However, this approach comes at the price of increased acquisition time and sensitivity to motion artifacts. To overcome these limitations, we applied a deep-learning denoising method capable of imitating the frame-averaging method. The resulting image had a similar image quality to the frame-averaging and was better than the classical digital filtering methods. We also evaluated if this method affects the tissue classifier model's accuracy that will provide feedback to the ablation laser. We found that image denoising significantly increased the accuracy of the tissue classifier. Furthermore, we observed that the classifier trained using the deep learning denoised images achieved similar accuracy to the classifier trained using frame-averaged images. The results suggest the possibility of using the deep learning method as a pre-processing step for real-time tissue classification in smart laser osteotomy.