Macrophage inflammation resolution requires CPEB4-directed offsetting of mRNA degradation

Elife. 2022 Apr 20:11:e75873. doi: 10.7554/eLife.75873.

Abstract

Chronic inflammation is a major cause of disease. Inflammation resolution is in part directed by the differential stability of mRNAs encoding pro-inflammatory and anti-inflammatory factors. In particular, tristetraprolin (TTP)-directed mRNA deadenylation destabilizes AU-rich element (ARE)-containing mRNAs. However, this mechanism alone cannot explain the variety of mRNA expression kinetics that are required to uncouple degradation of pro-inflammatory mRNAs from the sustained expression of anti-inflammatory mRNAs. Here, we show that the RNA-binding protein CPEB4 acts in an opposing manner to TTP in macrophages: it helps to stabilize anti-inflammatory transcripts harboring cytoplasmic polyadenylation elements (CPEs) and AREs in their 3'-UTRs, and it is required for the resolution of the lipopolysaccharide (LPS)-triggered inflammatory response. Coordination of CPEB4 and TTP activities is sequentially regulated through MAPK signaling. Accordingly, CPEB4 depletion in macrophages impairs inflammation resolution in an LPS-induced sepsis model. We propose that the counterbalancing actions of CPEB4 and TTP, as well as the distribution of CPEs and AREs in their target mRNAs, define transcript-specific decay patterns required for inflammation resolution. Thus, these two opposing mechanisms provide a fine-tuning control of inflammatory transcript destabilization while maintaining the expression of the negative feedback loops required for efficient inflammation resolution; disruption of this balance can lead to disease.

Keywords: CPEB; MAPK; RNA Binding Protein; TTP; cell biology; mRNA stability; mouse.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions
  • Humans
  • Inflammation / metabolism
  • Lipopolysaccharides
  • Macrophages* / metabolism
  • RNA Stability*
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • RNA-Binding Proteins* / genetics
  • RNA-Binding Proteins* / metabolism
  • Tristetraprolin* / genetics
  • Tristetraprolin* / metabolism

Substances

  • 3' Untranslated Regions
  • CPEB4 protein, human
  • Lipopolysaccharides
  • RNA, Messenger
  • RNA-Binding Proteins
  • Tristetraprolin

Associated data

  • GEO/GSE160191
  • GEO/GSE160246

Grants and funding

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.