Bacterial RNA chaperones and chaperone-like riboregulators: behind the scenes of RNA-mediated regulation of cellular metabolism

RNA Biol. 2022;19(1):419-436. doi: 10.1080/15476286.2022.2048565. Epub 2021 Dec 31.

Abstract

In all domains of life, RNA chaperones safeguard and guide the fate of the cellular RNA pool. RNA chaperones comprise structurally diverse proteins that ensure proper folding, stability, and ribonuclease resistance of RNA, and they support regulatory activities mediated by RNA. RNA chaperones constitute a topologically diverse group of proteins that often present an unstructured region and bind RNA with limited nucleotide sequence preferences. In bacteria, three main proteins - Hfq, ProQ, and CsrA - have been shown to regulate numerous complex processes, including bacterial growth, stress response and virulence. Hfq and ProQ have well-studied activities as global chaperones with pleiotropic impact, while CsrA has a chaperone-like role with more defined riboregulatory function. Here, we describe relevant novel insights into their common features, including RNA binding properties, unstructured domains, and interplay with other proteins important to RNA metabolism.

Keywords: C-terminal domain; CsrA; Hfq; ProQ; RNA chaperone; RNA metabolism; Riboregulation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteria / genetics
  • Bacteria / metabolism
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Gene Expression Regulation, Bacterial
  • Host Factor 1 Protein / genetics
  • Host Factor 1 Protein / metabolism
  • Molecular Chaperones / genetics
  • Molecular Chaperones / metabolism
  • RNA, Bacterial* / metabolism
  • RNA, Small Untranslated* / genetics
  • RNA-Binding Proteins / metabolism

Substances

  • Bacterial Proteins
  • Host Factor 1 Protein
  • Molecular Chaperones
  • RNA, Bacterial
  • RNA, Small Untranslated
  • RNA-Binding Proteins