Whole community and functional gene changes of biofilms on marine plastic debris in response to ocean acidification

Abstract

Plastics are accumulating in the world's oceans, while ocean waters are becoming acidified by increased CO₂. We compared metagenome of biofilms on tethered plastic bottles in subtidal waters off Japan naturally enriched in CO₂, compared to normal ambient CO₂ levels. Extending from an earlier amplicon study of bacteria, we used metagenomics to provide direct insights into changes in the full range of functional genes and the entire taxonomic tree of life in the context of the changing plastisphere. We found changes in the taxonomic community composition of all branches of life. This included a large increase in diatom relative abundance across the treatments but a decrease in diatom diversity. Network complexity among families decreased with acidification, showing overall simplification of biofilm integration. With acidification, there was decreased prevalence of genes associated with cell-cell interactions and antibiotic resistance, decreased detoxification genes, and increased stress tolerance genes. There were few nutrient cycling gene changes, suggesting that the role of plastisphere biofilms in nutrient processes within an acidified ocean may not change greatly. Our results suggest that as ocean CO₂ increases, the plastisphere will undergo broad-ranging changes in both functional and taxonomic composition, especially the ecologically important diatom group, with possible wider implications for ocean ecology.

Keywords: Biofilm; CO2; Functional genes; Metagenome; Ocean acidification; Plastisphere.