Understanding photosynthetic biofilm productivity and structure through 2D simulation

PLoS Comput Biol. 2022 Apr 4;18(4):e1009904. doi: 10.1371/journal.pcbi.1009904. eCollection 2022 Apr.

Abstract

We present a spatial model describing the growth of a photosynthetic microalgae biofilm. In this 2D-model we consider photosynthesis, cell carbon accumulation, extracellular matrix excretion, and mortality. The rate of each of these mechanisms is given by kinetic laws regulated by light, nitrate, oxygen and inorganic carbon. The model is based on mixture theory and the behaviour of each component is defined on one hand by mass conservation, which takes into account biological features of the system, and on the other hand by conservation of momentum, which expresses the physical properties of the components. The model simulates the biofilm structural dynamics following an initial colonization phase. It shows that a 75 μm thick active region drives the biofilm development. We then determine the optimal harvesting period and biofilm height which maximize productivity. Finally, different harvesting patterns are tested and their effect on biofilm structure are discussed. The optimal strategy differs whether the objective is to recover the total biofilm or just the algal biomass.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biofilms
  • Carbon
  • Computer Simulation
  • Microalgae*
  • Photosynthesis*

Substances

  • Carbon

Grants and funding

This work benefited from the support of the ANR PhotoBiofilm Explorer (ANR- 20-CE43-0008) This work benefited from the financial support of the LabeX LaSIPS project Greenbelt managed by the French National Research Agency (ANR) under the “Investissements d′avenir” program, to O. B. & F. L. This work also benefited from the support of the Treilles Foundation, to O. B. & F. L. The authors are grateful to the OPAL infrastructure from Université Côte d’Azur for providing resources and support, to O.B. & B. P. The funders had no role in study design data collection and analysis decision to publish or preparation of the manuscript.