MIA-QSAR study of the structural merging of (thio)benzamide herbicides with photosynthetic system II inhibitory activities

J Biomol Struct Dyn. 2023 Jun;41(9):3772-3778. doi: 10.1080/07391102.2022.2055649. Epub 2022 Mar 28.

Abstract

Benzamide herbicides consist of a class of photosynthetic system II (PSII) inhibitors widely used for weed control. However, the development of resistance by these weeds to the known herbicides requires an ongoing search for new agrochemicals. We report the combination of two congeneric series of (thio)benzamide herbicides into a single data set and subsequent modeling of their herbicidal activities against PSII using MIA-QSAR. The robust and predictive models were used to estimate the pIC50 of new agrochemical candidates, which were proposed based on a chemical mixing of the substructures of the most active compounds present in the data set. The chemical features affecting the herbicidal activities were analyzed using MIA contour maps, whereas the ligand-enzyme interactions responsible for the binding affinities were rationalized through docking studies. The proposed compound possessing a thiobenzamide moiety and C-11 chain, H, NO2, OH, and OH as variable substituents was the most promising alternative.Communicated by Ramaswamy H. Sarma.

Keywords: (thio)benzamides; Structure-activity; herbicidal activity; photosystem II.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Benzamides / chemistry
  • Benzamides / pharmacology
  • Herbicides* / chemistry
  • Herbicides* / pharmacology
  • Quantitative Structure-Activity Relationship

Substances

  • Herbicides
  • Benzamides