Quantitative Imaging of Bacteriophage Amplification for Rapid Detection of Bacteria in Model Foods

Nicharee Wisuthiphaet; Xu Yang; Glenn M Young; Nitin Nitin

doi:10.3389/fmicb.2022.853048

Quantitative Imaging of Bacteriophage Amplification for Rapid Detection of Bacteria in Model Foods

Front Microbiol. 2022 Mar 4:13:853048. doi: 10.3389/fmicb.2022.853048. eCollection 2022.

Authors

Nicharee Wisuthiphaet¹, Xu Yang², Glenn M Young¹, Nitin Nitin^{1

3}

Affiliations

¹ Department of Food Science and Technology, University of California, Davis, Davis, CA, United States.
² Nutrition and Food Science Department, California State Polytechnic University Pomona, Pomona, CA, United States.
³ Department of Biological and Agricultural Engineering, University of California, Davis, Davis, CA, United States.

Abstract

Rapid detection of bacteria in water and food samples is a critical need. The current molecular methods like real-time PCR can provide rapid detection after initial enrichment. However, these methods require significant preparation steps, specialized facilities to reduce contamination, and relatively expensive reagents. This study evaluates a novel approach for detecting bacteria based on imaging of bacteriophage amplification upon infection of the target host bacteria to mitigate some of these constraints and improve the specificity of discriminating live vs. dead bacteria. Thus, this research leverages the natural ability of lytic bacteriophages to rapidly amplify their genetic material and generate progeny phages upon infecting the host bacterium. This study uses a nucleic acid staining dye, a conventional fluorescence microscope, and quantitative image analysis for imaging the amplification of bacteriophages. The sensitivity and assay time for imaging-based quantification of phage amplification for detecting Escherichia coli were compared with RT-PCR and the standard plaque-forming assay for detection phage amplification in model systems, including coconut water and spinach wash water. The results demonstrate that the imaging approach matches both the sensitivity and speed for detecting E. coli using the RT-PCR method without requiring isolation of nucleic acids, expensive reagents, and specialized facilities. The quantitative imaging results demonstrate the detection of 10 CFU/ml of E. coli in coconut water and simulated spinach wash water with a chemical oxygen demand (COD) of 3,000 ppm within 8 h, including initial enrichment of the bacteria. In summary, the results of this study illustrate a novel phage amplification-based approach for detecting target bacteria in complex food and water samples using simple sample preparation methods and low-cost reagents.

Keywords: Escherichia coli; bacteriophage amplification; fluorescence imaging; pathogen detection; qPCR.