Genome-wide association study reveals candidate genes relevant to body weight in female turkeys (Meleagris gallopavo)

PLoS One. 2022 Mar 10;17(3):e0264838. doi: 10.1371/journal.pone.0264838. eCollection 2022.

Abstract

The underlying genetic mechanisms affecting turkey growth traits have not been widely investigated. Genome-wide association studies (GWAS) is a powerful approach to identify candidate regions associated with complex phenotypes and diseases in livestock. In the present study, we performed GWAS to identify regions associated with 18-week body weight in a turkey population. The data included body weight observations for 24,989 female turkeys genotyped based on a 65K SNP panel. The analysis was carried out using a univariate mixed linear model with hatch-week-year and the 2 top principal components fitted as fixed effects and the accumulated polygenic effect of all markers captured by the genomic relationship matrix as random. Thirty-three significant markers were observed on 1, 2, 3, 4, 7 and 12 chromosomes, while 26 showed strong linkage disequilibrium extending up to 410 kb. These significant markers were mapped to 37 genes, of which 13 were novel. Interestingly, many of the investigated genes are known to be involved in growth and body weight. For instance, genes AKR1D1, PARP12, BOC, NCOA1, ADCY3 and CHCHD7 regulate growth, body weight, metabolism, digestion, bile acid biosynthetic and development of muscle cells. In summary, the results of our study revealed novel candidate genomic regions and candidate genes that could be managed within a turkey breeding program and adapted in fine mapping of quantitative trait loci to enhance genetic improvement in this species.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Body Weight / genetics
  • Female
  • Genome-Wide Association Study* / methods
  • Genotype
  • Linkage Disequilibrium
  • Male
  • Phenotype
  • Polymorphism, Single Nucleotide
  • Quantitative Trait Loci
  • Turkeys* / genetics

Grants and funding

The study was conducted as part of the project entitled "Application of genomic selection in turkeys for health, welfare, efficiency and production traits". This Project was funded by the Government of Canada through Genome Canada and the Ontario Genomics Institute (OGI-133) through the Genome Canada Genomic Application Partnership Program [recipients: CB (Academic), BW (Industry)]. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.