Genome-wide evolution and expression analysis of the MYB-CC gene family in Brassica spp

PeerJ. 2022 Feb 25:10:e12882. doi: 10.7717/peerj.12882. eCollection 2022.

Abstract

The MYB-CC family is a subtype within the MYB superfamily. This family contains an MYB domain and a predicted coiled-coil (CC) domain. Several MYB-CC transcription factors are involved in the plant's adaptability to low phosphate (Pi) stress. We identified 30, 34, and 55 MYB-CC genes in Brassica rapa, Brassica oleracea, and Brassica napus, respectively. The MYB-CC genes were divided into nine groups based on phylogenetic analysis. The analysis of the chromosome distribution and gene structure revealed that most MYB-CC genes retained the same relative position on the chromosomes and had similar gene structures during allotetraploidy. Evolutionary analysis showed that the ancestral whole-genome triplication (WGT) and the recent allopolyploidy are critical for the expansion of the MYB-CC gene family. The expression patterns of MYB-CC genes were found to be diverse in different tissues of the three Brassica species. Furthermore, the gene expression analysis under low Pi stress revealed that MYB-CC genes may be related to low Pi stress responses. These results may increase our understanding of MYB-CC gene family diversification and provide the basis for further analysis of the specific functions of MYB-CC genes in Brassica species.

Keywords: Allotetraploid; Brassica; Diploid; Evolution; MYB-CC.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Brassica napus* / genetics
  • Brassica rapa* / genetics
  • Brassica* / genetics
  • Genome, Plant / genetics
  • Phylogeny

Grants and funding

The National Natural Sciences Foundation of China (Grant No. 31971814 and 31571572) and the Project of National Research and Development of China (Grant No. 2016YFD0100202) funded this research. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.