ΔNp63-Senataxin circuit controls keratinocyte differentiation by promoting the transcriptional termination of epidermal genes

Proc Natl Acad Sci U S A. 2022 Mar 8;119(10):e2104718119. doi: 10.1073/pnas.2104718119. Epub 2022 Mar 2.

Abstract

SignificanceΔNp63 is a master regulator of skin homeostasis since it finely controls keratinocyte differentiation and proliferation. Here, we provide cellular and molecular evidence demonstrating the functional role of a ΔNp63 interactor, the R-loop-resolving enzyme Senataxin (SETX), in fine-tuning keratinocyte differentiation. We found that SETX physically binds the p63 DNA-binding motif present in two early epidermal differentiation genes, Keratin 1 (KRT1) and ZNF750, facilitating R-loop removal over their 3' ends and thus allowing efficient transcriptional termination and gene expression. These molecular events translate into the inability of SETX-depleted keratinocytes to undergo the correct epidermal differentiation program. Remarkably, SETX is dysregulated in cutaneous squamous cell carcinoma, suggesting its potential involvement in the pathogenesis of skin disorders.

Keywords: Senataxin; p63; skin differentiation.

MeSH terms

  • Cell Differentiation*
  • DNA Helicases / genetics
  • DNA Helicases / metabolism*
  • Epidermis / metabolism*
  • Humans
  • Keratin-1 / biosynthesis
  • Keratin-1 / genetics
  • Keratinocytes / metabolism*
  • MCF-7 Cells
  • Multifunctional Enzymes / genetics
  • Multifunctional Enzymes / metabolism*
  • RNA Helicases / genetics
  • RNA Helicases / metabolism*
  • Transcription Factors / biosynthesis
  • Transcription Factors / genetics
  • Transcription Factors / metabolism*
  • Transcription Termination, Genetic*
  • Tumor Suppressor Proteins / biosynthesis
  • Tumor Suppressor Proteins / genetics
  • Tumor Suppressor Proteins / metabolism*

Substances

  • KRT1 protein, human
  • Keratin-1
  • Multifunctional Enzymes
  • TP63 protein, human
  • Transcription Factors
  • Tumor Suppressor Proteins
  • ZNF750 protein, human
  • SETX protein, human
  • DNA Helicases
  • RNA Helicases