Genome-wide CRISPR screen identifies synthetic lethality between DOCK1 inhibition and metformin in liver cancer

Protein Cell. 2022 Nov;13(11):825-841. doi: 10.1007/s13238-022-00906-6. Epub 2022 Feb 26.

Abstract

Metformin is currently a strong candidate anti-tumor agent in multiple cancers. However, its anti-tumor effectiveness varies among different cancers or subpopulations, potentially due to tumor heterogeneity. It thus remains unclear which hepatocellular carcinoma (HCC) patient subpopulation(s) can benefit from metformin treatment. Here, through a genome-wide CRISPR-Cas9-based knockout screen, we find that DOCK1 levels determine the anti-tumor effects of metformin and that DOCK1 is a synthetic lethal target of metformin in HCC. Mechanistically, metformin promotes DOCK1 phosphorylation, which activates RAC1 to facilitate cell survival, leading to metformin resistance. The DOCK1-selective inhibitor, TBOPP, potentiates anti-tumor activity by metformin in vitro in liver cancer cell lines and patient-derived HCC organoids, and in vivo in xenografted liver cancer cells and immunocompetent mouse liver cancer models. Notably, metformin improves overall survival of HCC patients with low DOCK1 levels but not among patients with high DOCK1 expression. This study shows that metformin effectiveness depends on DOCK1 levels and that combining metformin with DOCK1 inhibition may provide a promising personalized therapeutic strategy for metformin-resistant HCC patients.

Keywords: CRISPR screen; DOCK1; hepatocellular carcinoma; metformin; small GTPase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antineoplastic Agents* / pharmacology
  • Antineoplastic Agents* / therapeutic use
  • Carcinoma, Hepatocellular* / drug therapy
  • Carcinoma, Hepatocellular* / genetics
  • Carcinoma, Hepatocellular* / metabolism
  • Cell Line, Tumor
  • Clustered Regularly Interspaced Short Palindromic Repeats
  • Genome
  • Humans
  • Liver Neoplasms* / drug therapy
  • Liver Neoplasms* / genetics
  • Liver Neoplasms* / metabolism
  • Metformin* / pharmacology
  • Metformin* / therapeutic use
  • Mice
  • Phosphorylation
  • Synthetic Lethal Mutations
  • Transcription Factors / metabolism
  • rac GTP-Binding Proteins* / antagonists & inhibitors
  • rac GTP-Binding Proteins* / genetics
  • rac GTP-Binding Proteins* / metabolism

Substances

  • Antineoplastic Agents
  • DOCK1 protein, human
  • Transcription Factors
  • Metformin
  • rac GTP-Binding Proteins