Phylogenetic Comparison and Characterization of an mcr-1-Harboring Complete Plasmid Genome Isolated from Enterobacteriaceae

Microb Drug Resist. 2022 Apr;28(4):492-497. doi: 10.1089/mdr.2021.0164. Epub 2022 Feb 18.

Abstract

Global dissemination of mobilized colistin resistance (mcr)-1-carrying plasmids has been reported. This study aimed to investigate the global dissemination of these plasmids using whole genome sequencing to provide better understanding on genetic characteristics. Sixty-seven complete plasmid genomes harboring mcr-1 were obtained. Phylogeny was built against full plasmid genomes. Different replicon types of plasmid were compared in terms of antimicrobial resistance genes (ARGs), insertion sequence, and other functional genes. Five different replicon types of plasmid (IncX4, IncI2, IncP1, IncHIA, and IncFIB) were found to harbor mcr-1. IncX4 and IncI2 types of plasmid were well clustered in accordance with the country where they were isolated (and not as IncHIA and IncFIB). Three insertion sequences (ISApl1, ISKpn26, and IS1294) were identified in up- and/or downstream of mcr-1. Plasmids IncX4 and IncI2 were observed across the sample origin. Plasmids IncX4 showed high uniformity regardless of the origin of isolates and harbored H-NS coding genes, a facilitator for successful plasmid transfer. All three insertion sequences were observed in IncI2 plasmids. IncHI2 plasmids harbored various ARGs in addition to mcr-1. Our results elucidate the characteristics and phylogenetic relationships of complete mcr-1-harboring plasmids, indicating that global dissemination of mcr-1 is primarily owing to plasmid transfer rather than clonal spread.

Keywords: complete plasmid; global transmission; mcr-1; phylogeny.

Publication types

  • Comparative Study

MeSH terms

  • Anti-Bacterial Agents / pharmacology
  • Colistin* / pharmacology
  • DNA Transposable Elements / genetics
  • Drug Resistance, Bacterial / genetics
  • Enterobacteriaceae
  • Escherichia coli
  • Escherichia coli Proteins* / genetics
  • Phylogeny
  • Plasmids / genetics

Substances

  • Anti-Bacterial Agents
  • DNA Transposable Elements
  • Escherichia coli Proteins
  • MCR-1 protein, E coli
  • Colistin