Stratification of hospitalized COVID-19 patients into clinical severity progression groups by immuno-phenotyping and machine learning

Nat Commun. 2022 Feb 17;13(1):915. doi: 10.1038/s41467-022-28621-0.

Abstract

Quantitative or qualitative differences in immunity may drive clinical severity in COVID-19. Although longitudinal studies to record the course of immunological changes are ample, they do not necessarily predict clinical progression at the time of hospital admission. Here we show, by a machine learning approach using serum pro-inflammatory, anti-inflammatory and anti-viral cytokine and anti-SARS-CoV-2 antibody measurements as input data, that COVID-19 patients cluster into three distinct immune phenotype groups. These immune-types, determined by unsupervised hierarchical clustering that is agnostic to severity, predict clinical course. The identified immune-types do not associate with disease duration at hospital admittance, but rather reflect variations in the nature and kinetics of individual patient's immune response. Thus, our work provides an immune-type based scheme to stratify COVID-19 patients at hospital admittance into high and low risk clinical categories with distinct cytokine and antibody profiles that may guide personalized therapy.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aged
  • Antibodies, Viral / blood*
  • COVID-19 / pathology*
  • Coronavirus Nucleocapsid Proteins / immunology
  • Cytokines / blood*
  • Disease Progression
  • Female
  • Hospitalization
  • Humans
  • Immunoglobulin A / blood
  • Immunoglobulin G / blood
  • Immunoglobulin M / blood
  • Immunophenotyping / methods
  • Machine Learning
  • Male
  • Middle Aged
  • Phosphoproteins / immunology
  • SARS-CoV-2 / immunology*
  • Severity of Illness Index*

Substances

  • Antibodies, Viral
  • Coronavirus Nucleocapsid Proteins
  • Cytokines
  • Immunoglobulin A
  • Immunoglobulin G
  • Immunoglobulin M
  • Phosphoproteins
  • nucleocapsid phosphoprotein, SARS-CoV-2