In Silico and Experimental ADAM17 Kinetic Modeling as Basis for Future Screening System for Modulators

Int J Mol Sci. 2022 Jan 25;23(3):1368. doi: 10.3390/ijms23031368.

Abstract

Understanding the mechanisms of modulators' action on enzymes is crucial for optimizing and designing pharmaceutical substances. The acute inflammatory response, in particular, is regulated mainly by a disintegrin and metalloproteinase (ADAM) 17. ADAM17 processes several disease mediators such as TNFα and APP, releasing their soluble ectodomains (shedding). A malfunction of this process leads to a disturbed inflammatory response. Chemical protease inhibitors such as TAPI-1 were used in the past to inhibit ADAM17 proteolytic activity. However, due to ADAM17's broad expression and activity profile, the development of active-site-directed ADAM17 inhibitor was discontinued. New 'exosite' (secondary substrate binding site) inhibitors with substrate selectivity raised the hope of a substrate-selective modulation as a promising approach for inflammatory disease therapy. This work aimed to develop a high-throughput screen for potential ADAM17 modulators as therapeutic drugs. By combining experimental and in silico methods (structural modeling and docking), we modeled the kinetics of ADAM17 inhibitor. The results explain ADAM17 inhibition mechanisms and give a methodology for studying selective inhibition towards the design of pharmaceutical substances with higher selectivity.

Keywords: ADAM17; biocatalysis; exosite inhibitors; inhibitor design; kinetic modelling; metalloproteinases; molecular docking; reaction mechanism.

MeSH terms

  • ADAM Proteins / metabolism
  • ADAM17 Protein / antagonists & inhibitors*
  • ADAM17 Protein / drug effects*
  • ADAM17 Protein / metabolism*
  • Binding Sites / drug effects
  • Catalytic Domain / drug effects
  • Computer Simulation
  • Drug Evaluation, Preclinical / methods
  • HEK293 Cells
  • High-Throughput Screening Assays / methods
  • Humans
  • Kinetics
  • Protease Inhibitors / pharmacology
  • Substrate Specificity / drug effects

Substances

  • Protease Inhibitors
  • ADAM Proteins
  • ADAM17 Protein
  • ADAM17 protein, human