Methyltransferase-like (METTL)14-mediated N6-methyladenosine modification modulates retinal pigment epithelial (RPE) activity by regulating the methylation of microtubule-associated protein (MAP)2

Bioengineered. 2022 Mar;13(3):4773-4785. doi: 10.1080/21655979.2022.2032968.

Abstract

The expression of METTL14 is significantly reduced in patients with retinitis pigmentosa (RP). To clarify the significance of the N6-methyladenosine (m6A) RNA modification in RP, we examined phagocytosis, apoptosis, and cell cycle distribution in a human RPE cell line, ARPE-19, following lentivirus-mediated knockdown of METTL14. Differentially expressed genes and changes in m6A level were evaluated by RNA sequencing (RNA-seq) and methylated RNA immunoprecipitation sequencing (MeRIP-seq), respectively. The results showed that phagocytosis and proliferation were decreased whereas apoptosis was increased in RPE cells by METTL14 silencing. We found that METTL14 directly regulated m6A level and the expression of MAP2, as determined by RNA-seq, MeRIP-seq, MeRIP quantitative PCR, and the RNA pull-down assay. Additionally, MAP2 could bind to neuronal differentiation (NEUROD)1, a pathogenic gene in RPE-associated diseases. A family member of the YTH domain, (YTHDF)2 was recognized as an m6A reader of MAP2 mRNA. MAP2 overexpression had the same effects as METTL14 knockdown in RPE cells. Thus, METTL14 regulates the expression of MAP2 via the modification of m6A, resulting in the dysregulation of NEUROD1 and pathologic changes in RPE cells. These findings suggest that therapeutic strategies targeting the m6A modification of MAP2 or the METTL14/YTHDF2/MAP2/NEUROD1 signaling axis may be effective in the treatment of RPE-associated ocular diseases.

Keywords: MAP2; METTL14; NEUROD1; RNA methylation; YTHDF2; m6A; retinal pigment epithelial cells; retinitis pigmentosa.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine / analogs & derivatives
  • Adenosine / metabolism
  • Humans
  • Methylation
  • Methyltransferases* / genetics
  • Methyltransferases* / metabolism
  • Microtubule-Associated Proteins* / metabolism
  • RNA / metabolism
  • Retinal Pigment Epithelium* / cytology

Substances

  • MAP2 protein, human
  • Microtubule-Associated Proteins
  • RNA
  • N-methyladenosine
  • METTL14 protein, human
  • Methyltransferases
  • Adenosine

Grants and funding

This work was supported by grants from the National Key R&D Program of China [nos. 2017YFA0105301]; National Natural Science Foundation of China [no. 81770970 to XM]; Dalian Science and Technology Innovation Foundation [no. 2018J12SN086 to XM]; Liaoning Science and Technology Planning Project [no. 2017225051 to XM] Natural Science Foundation of Liaoning Province of China [no. 20170540296 to LY]; and Dalian Medical Science Research Program [no. 2016QN002 to LY].