Understanding the microviscosity of soft condensed matter is important to clarify the mechanisms of chemical, physical or biological events occurring at the nanoscale. Here, we report that flapping fluorophores (FLAP) can serve as microviscosity probes capable of detecting small changes. By the ratiometric fluorescence analysis, one of the FLAP probes detects a macroscopic viscosity change of a few cP, occurring at the thermal phase transition of a nematic liquid crystal. We discuss the impact of the chemical structure on the detection capability, and the orientation of the FLAP molecules in the ground and excited states. This work contributes to experimentally providing a molecular picture of liquid crystals, which are often viewed as a continuum.