Evaluation of a syndromic panel polymerase chain reaction (spPCR) assay for the diagnosis of device-associated bone and joint infections (BJI)

Int J Infect Dis. 2022 Mar:116:283-288. doi: 10.1016/j.ijid.2022.01.013. Epub 2022 Jan 12.

Abstract

Objective: Pathogen detection is crucial for diagnosis and targeted therapy in implant-associated bone and joint infections (BJI). Culture-based microbiology regularly fails to identify causative pathogens. This study evaluated the diagnostic accuracy and clinical usefulness of a syndromic panel polymerase chain reaction (spPCR) assay targeting common BJI pathogens in tissue specimens from patients with implant-associated BJI.

Methods: Results obtained by spPCR assay and a 16S rDNA PCR were compared with results obtained from a standard of care (SOC) culture-based diagnostics, serving as a gold standard. In total, 126 specimens obtained from 73 patients were analyzed.

Results: The spPCR assay correctly identified 33/40 culture-positive samples (82.5 %) and was positive in 9/86 (10.5 %) culture-negative samples, resulting in an overall sensitivity of 84.6 % (95% confidence interval [CI] 68.79-93.59%) and specificity of 89.35% (95% CI 80.6-94.81%). The spPCR was more sensitive compared with the 16S rDNA PCR (37.5%). The spPCR identified pathogens in 7/51 (13.7%) SOC-negative patients. Re-evaluation of spPCR results in clinical context suggested their clinical significance.

Conclusion: An spPCR assay targeting common pathogens causing implant-associated BJI may help to identify causative agents in culture-negative cases. As false-negative results are possible, spPCR assays appear as an add-on approach for pathogen detection in implant-associated BJI.

Keywords: 16S rRNA PCR; Bone and joint infections; culture; pathogen detection; syndromic panel PCR.

MeSH terms

  • DNA, Ribosomal
  • Humans
  • Nucleic Acid Amplification Techniques*
  • Polymerase Chain Reaction / methods
  • RNA, Ribosomal, 16S / genetics
  • Sensitivity and Specificity

Substances

  • DNA, Ribosomal
  • RNA, Ribosomal, 16S