Proteomic analysis in primary T cells reveals IL-7 alters T cell receptor thresholding via CYTIP/cytohesin/LFA-1 localisation and activation

Biochem J. 2022 Feb 11;479(3):225-243. doi: 10.1042/BCJ20210313.

Abstract

The ability of the cellular immune system to discriminate self from foreign antigens depends on the appropriate calibration of the T cell receptor (TCR) signalling threshold. The lymphocyte homeostatic cytokine interleukin 7 (IL-7) is known to affect TCR thresholding, but the molecular mechanism is not fully elucidated. A better understanding of this process is highly relevant in the context of autoimmune disease therapy and cancer immunotherapy. We sought to characterise the early signalling events attributable to IL-7 priming; in particular, the altered phosphorylation of signal transduction proteins and their molecular localisation to the TCR. By integrating high-resolution proximity- phospho-proteomic and imaging approaches using primary T cells, rather than engineered cell lines or an in vitro expanded T cell population, we uncovered transduction events previously not linked to IL-7. We show that IL-7 leads to dephosphorylation of cytohesin interacting protein (CYTIP) at a hitherto undescribed phosphorylation site (pThr280) and alters the co-localisation of cytohesin-1 with the TCR and LFA-1 integrin. These results show that IL-7, acting via CYTIP and cytohesin-1, may impact TCR activation thresholds by enhancing the co-clustering of TCR and LFA-1 integrin.

Keywords: CYTIP/cytohesin; IL7; LFA; SPPLAT; TCR; phosphoproteomics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actin Cytoskeleton / metabolism
  • Blood Donors
  • Cells, Cultured
  • Guanine Nucleotide Exchange Factors / metabolism*
  • Humans
  • Interleukin-7 / pharmacology*
  • Lymphocyte Activation / drug effects
  • Lymphocyte Function-Associated Antigen-1 / metabolism*
  • Phosphorylation / drug effects
  • Proteome / metabolism*
  • Proteomics / methods*
  • Receptors, Antigen, T-Cell / metabolism*
  • Recombinant Proteins / pharmacology
  • Signal Transduction / drug effects*
  • T-Lymphocytes / immunology*
  • Threonine / metabolism
  • Transcription Factors / metabolism*

Substances

  • CYTIP protein, human
  • Guanine Nucleotide Exchange Factors
  • IL7 protein, human
  • Interleukin-7
  • Lymphocyte Function-Associated Antigen-1
  • Proteome
  • Receptors, Antigen, T-Cell
  • Recombinant Proteins
  • Transcription Factors
  • cytohesin-1
  • Threonine