Allele-specific endogenous tagging and quantitative analysis of β-catenin in colorectal cancer cells

Elife. 2022 Jan 11:11:e64498. doi: 10.7554/eLife.64498.

Abstract

Wnt signaling plays important roles in development, homeostasis, and tumorigenesis. Mutations in β-catenin that activate Wnt signaling have been found in colorectal and hepatocellular carcinomas. However, the dynamics of wild-type and mutant forms of β-catenin are not fully understood. Here, we genome-engineered fluorescently tagged alleles of endogenous β-catenin in a colorectal cancer cell line. Wild-type and oncogenic mutant alleles were tagged with different fluorescent proteins, enabling the analysis of both variants in the same cell. We analyzed the properties of both β-catenin alleles using immunoprecipitation, immunofluorescence, and fluorescence correlation spectroscopy approaches, revealing distinctly different biophysical properties. In addition, activation of Wnt signaling by treatment with a GSK3β inhibitor or a truncating APC mutation modulated the wild-type allele to mimic the properties of the mutant β-catenin allele. The one-step tagging strategy demonstrates how genome engineering can be employed for the parallel functional analysis of different genetic variants.

Keywords: FCS; Wnt signaling; cancer; cell biology; crispr; ctnnb1; endogenous tagging; fluorescence correlation spectroscopy; genetics; genomics; human; oncogenic signaling; β-catenin.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles*
  • Carcinogenesis / genetics*
  • Carcinoma, Hepatocellular / genetics
  • Colorectal Neoplasms / genetics
  • Genetic Engineering / methods
  • Genetic Variation
  • Genome*
  • HCT116 Cells
  • Humans
  • Liver Neoplasms / genetics
  • Mutation
  • Wnt Signaling Pathway / physiology
  • beta Catenin / analysis*
  • beta Catenin / genetics*

Substances

  • CTNNB1 protein, human
  • beta Catenin

Grants and funding

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.