IMPDH1 retinal variants control filament architecture to tune allosteric regulation

Nat Struct Mol Biol. 2022 Jan;29(1):47-58. doi: 10.1038/s41594-021-00706-2. Epub 2022 Jan 10.

Abstract

Inosine-5'-monophosphate dehydrogenase (IMPDH), a key regulatory enzyme in purine nucleotide biosynthesis, dynamically assembles filaments in response to changes in metabolic demand. Humans have two isoforms: IMPDH2 filaments reduce sensitivity to feedback inhibition, while IMPDH1 assembly remains uncharacterized. IMPDH1 plays a unique role in retinal metabolism, and point mutants cause blindness. Here, in a series of cryogenic-electron microscopy structures we show that human IMPDH1 assembles polymorphic filaments with different assembly interfaces in extended and compressed states. Retina-specific splice variants introduce structural elements that reduce sensitivity to GTP inhibition, including stabilization of the extended filament form. Finally, we show that IMPDH1 disease mutations fall into two classes: one disrupts GTP regulation and the other has no effect on GTP regulation or filament assembly. These findings provide a foundation for understanding the role of IMPDH1 in retinal function and disease and demonstrate the diverse mechanisms by which metabolic enzyme filaments are allosterically regulated.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphate / metabolism
  • Allosteric Regulation
  • Binding Sites
  • Catalytic Domain
  • Guanosine Triphosphate / metabolism
  • HEK293 Cells
  • Humans
  • IMP Dehydrogenase / chemistry
  • IMP Dehydrogenase / genetics*
  • IMP Dehydrogenase / ultrastructure
  • Models, Molecular
  • NAD / metabolism
  • Retina / enzymology*
  • Retinal Diseases / genetics

Substances

  • NAD
  • Guanosine Triphosphate
  • Adenosine Triphosphate
  • IMP Dehydrogenase