Hypocrates is a genetically encoded fluorescent biosensor for (pseudo)hypohalous acids and their derivatives

Nat Commun. 2022 Jan 10;13(1):171. doi: 10.1038/s41467-021-27796-2.

Abstract

The lack of tools to monitor the dynamics of (pseudo)hypohalous acids in live cells and tissues hinders a better understanding of inflammatory processes. Here we present a fluorescent genetically encoded biosensor, Hypocrates, for the visualization of (pseudo)hypohalous acids and their derivatives. Hypocrates consists of a circularly permuted yellow fluorescent protein integrated into the structure of the transcription repressor NemR from Escherichia coli. We show that Hypocrates is ratiometric, reversible, and responds to its analytes in the 106 M-1s-1 range. Solving the Hypocrates X-ray structure provided insights into its sensing mechanism, allowing determination of the spatial organization in this circularly permuted fluorescent protein-based redox probe. We exemplify its applicability by imaging hypohalous stress in bacteria phagocytosed by primary neutrophils. Finally, we demonstrate that Hypocrates can be utilized in combination with HyPerRed for the simultaneous visualization of (pseudo)hypohalous acids and hydrogen peroxide dynamics in a zebrafish tail fin injury model.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animal Fins / diagnostic imaging*
  • Animal Fins / injuries
  • Animal Fins / metabolism
  • Animals
  • Bacterial Proteins / genetics*
  • Bacterial Proteins / metabolism
  • Biosensing Techniques / instrumentation
  • Biosensing Techniques / methods*
  • Crystallography, X-Ray
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • Fluorescent Dyes / chemistry*
  • Genes, Reporter
  • Hydrogen Peroxide / chemistry
  • Hypochlorous Acid / analysis*
  • Hypochlorous Acid / chemical synthesis
  • Hypochlorous Acid / metabolism
  • Luminescent Proteins / genetics*
  • Luminescent Proteins / metabolism
  • Neutrophils / cytology
  • Neutrophils / immunology
  • Oxidation-Reduction
  • Phagocytosis
  • Transcription Factors / genetics
  • Transcription Factors / metabolism
  • Zebrafish

Substances

  • Bacterial Proteins
  • Escherichia coli Proteins
  • Fluorescent Dyes
  • Luminescent Proteins
  • NemR protein, E coli
  • Transcription Factors
  • yellow fluorescent protein, Bacteria
  • Hypochlorous Acid
  • Hydrogen Peroxide