First mitochondrial genomes of Chrysopetalidae (Annelida) from shallow-water and deep-sea chemosynthetic environments

Gene. 2022 Mar 20:815:146159. doi: 10.1016/j.gene.2021.146159. Epub 2022 Jan 4.

Abstract

Among Annelida, Chrysopetalidae is an ecologically and morphologically diverse group, which includes shallow-water, deep-sea, free-living, and symbiotic species. Here, the four first mitochondrial genomes of this group are presented and described. One of the free-living shallow-water species Chrysopetalum debile (Chrysopetalinae), one of the yet undescribed free-living deep-sea species Boudemos sp., and those of the two deep-sea bivalve endosymbionts Craseoschema thyasiricola and Iheyomytilidicola lauensis (Calamyzinae). An updated phylogeny of Chrysopetalidae is performed, which supports previous phylogenetic hypotheses within Chrysopetalinae and indicates a complex ecological evolution within Calamyzinae. Additionally, analyses of natural selection pressure in the four mitochondrial genomes and additional genes from the two shallow-water species Bhawania goodei and Arichlidon gathofi were performed. Relaxed selection pressure in the mitochondrion of deep-sea and symbiotic species was found, with many sites under selection identified in the COX3 gene of deep-sea species.

Keywords: Deep-sea habitats; Mitogenome; Phylogeny; Pleistoannelida; Selection pressure; Symbionts.

MeSH terms

  • Animals
  • Codon Usage
  • Ecosystem
  • Genome, Mitochondrial*
  • Phylogeny*
  • Polychaeta / genetics*
  • Proteins / genetics
  • RNA, Transfer / genetics
  • Selection, Genetic*
  • Symbiosis
  • Water

Substances

  • Proteins
  • Water
  • RNA, Transfer