Genomic profiling and expression analysis of the diacylglycerol kinase gene family in heterologous hexaploid wheat

PeerJ. 2021 Dec 14:9:e12480. doi: 10.7717/peerj.12480. eCollection 2021.

Abstract

The inositol phospholipid signaling system mediates plant growth, development, and responses to adverse conditions. Diacylglycerol kinase (DGK) is one of the key enzymes in the phosphoinositide-cycle (PI-cycle), which catalyzes the phosphorylation of diacylglycerol (DAG) to form phosphatidic acid (PA). To date, comprehensive genomic and functional analyses of DGKs have not been reported in wheat. In this study, 24 DGK gene family members from the wheat genome (TaDGKs) were identified and analyzed. Each putative protein was found to consist of a DGK catalytic domain and an accessory domain. The analyses of phylogenetic and gene structure analyses revealed that each TaDGK gene could be grouped into clusters I, II, or III. In each phylogenetic subgroup, the TaDGKs demonstrated high conservation of functional domains, for example, of gene structure and amino acid sequences. Four coding sequences were then cloned from Chinese Spring wheat. Expression analysis of these four genes revealed that each had a unique spatial and developmental expression pattern, indicating their functional diversification across wheat growth and development processes. Additionally, TaDGKs were also prominently up-regulated under salt and drought stresses, suggesting their possible roles in dealing with adverse environmental conditions. Further cis-regulatory elements analysis elucidated transcriptional regulation and potential biological functions. These results provide valuable information for understanding the putative functions of DGKs in wheat and support deeper functional analysis of this pivotal gene family. The 24 TaDGKs identified and analyzed in this study provide a strong foundation for further exploration of the biological function and regulatory mechanisms of TaDGKs in response to environmental stimuli.

Keywords: Abiotic stress; Diacylglycerol kinase; Gene family; Wheat.

Grants and funding

This work was supported by grants from the National Science Foundation of China (NSFC) (Project 31900623), the Natural Science Foundation of Hebei Province in China (Projects C2017204095 and C2019204041); the Science and Technology Research Project of University of Hebei Province, China (ZD2017039 and QN2020237). Each of the funders provided financial support for the purchase of instruments, reagents for research, and the fee for English editing of manuscript was offered by C2019204041. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.