Cryotrapping peroxide in the active site of human mitochondrial manganese superoxide dismutase crystals for neutron diffraction

Acta Crystallogr F Struct Biol Commun. 2022 Jan 1;78(Pt 1):8-16. doi: 10.1107/S2053230X21012413. Epub 2022 Jan 1.

Abstract

Structurally identifying the enzymatic intermediates of redox proteins has been elusive due to difficulty in resolving the H atoms involved in catalysis and the susceptibility of ligand complexes to photoreduction from X-rays. Cryotrapping ligands for neutron protein crystallography combines two powerful tools that offer the advantage of directly identifying hydrogen positions in redox-enzyme intermediates without radiolytic perturbation of metal-containing active sites. However, translating cryogenic techniques from X-ray to neutron crystallography is not straightforward due to the large crystal volumes and long data-collection times. Here, methods have been developed to visualize the evasive peroxo complex of manganese superoxide dismutase (MnSOD) so that all atoms, including H atoms, could be visualized. The subsequent cryocooling and ligand-trapping methods resulted in neutron data collection to 2.30 Å resolution. The P6122 crystal form of MnSOD is challenging because it has some of the largest unit-cell dimensions (a = b = 77.8, c = 236.8 Å) ever studied using high-resolution cryo-neutron crystallography. The resulting neutron diffraction data permitted the visualization of a dioxygen species bound to the MnSOD active-site metal that was indicative of successful cryotrapping.

Keywords: cryotrapping; human manganese superoxide dismutase; large unit cell; neutron diffraction; peroxide.

MeSH terms

  • Catalytic Domain
  • Crystallography, X-Ray
  • Humans
  • Neutron Diffraction*
  • Peroxides*
  • Superoxide Dismutase / chemistry

Substances

  • Peroxides
  • Superoxide Dismutase