Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP

Nat Commun. 2021 Dec 13;12(1):7236. doi: 10.1038/s41467-021-27415-0.

Abstract

During translation, a conserved GTPase elongation factor-EF-G in bacteria or eEF2 in eukaryotes-translocates tRNA and mRNA through the ribosome. EF-G has been proposed to act as a flexible motor that propels tRNA and mRNA movement, as a rigid pawl that biases unidirectional translocation resulting from ribosome rearrangements, or by various combinations of motor- and pawl-like mechanisms. Using time-resolved cryo-EM, we visualized GTP-catalyzed translocation without inhibitors, capturing elusive structures of ribosome•EF-G intermediates at near-atomic resolution. Prior to translocation, EF-G binds near peptidyl-tRNA, while the rotated 30S subunit stabilizes the EF-G GTPase center. Reverse 30S rotation releases Pi and translocates peptidyl-tRNA and EF-G by ~20 Å. An additional 4-Å translocation initiates EF-G dissociation from a transient ribosome state with highly swiveled 30S head. The structures visualize how nearly rigid EF-G rectifies inherent and spontaneous ribosomal dynamics into tRNA-mRNA translocation, whereas GTP hydrolysis and Pi release drive EF-G dissociation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cryoelectron Microscopy*
  • Escherichia coli / chemistry
  • Escherichia coli / metabolism
  • Guanosine Triphosphate / chemistry*
  • Guanosine Triphosphate / metabolism
  • Peptide Elongation Factor G / chemistry*
  • Peptide Elongation Factor G / metabolism
  • Phosphates / metabolism
  • Protein Binding
  • Protein Biosynthesis
  • RNA, Messenger / metabolism
  • RNA, Transfer / metabolism
  • RNA, Transfer, Amino Acyl / metabolism
  • Ribosome Subunits, Small, Bacterial / chemistry
  • Ribosome Subunits, Small, Bacterial / metabolism
  • Ribosomes / chemistry*
  • Ribosomes / metabolism

Substances

  • Peptide Elongation Factor G
  • Phosphates
  • RNA, Messenger
  • RNA, Transfer, Amino Acyl
  • tRNA, peptidyl-
  • Guanosine Triphosphate
  • RNA, Transfer