Detection of Viroids by sPAGE Gel Electrophoresis

Methods Mol Biol. 2022:2316:71-77. doi: 10.1007/978-1-0716-1464-8_7.

Abstract

Nucleic acid polyacrylamide gel electrophoresis (PAGE) has played a critical role in the identification and characterization of viroid RNAs. In addition, double PAGE has been a very efficient tool for the detection of viroids as it is sequence independent and is based on the viroid structure of covalently closed/circular molecules. sPAGE has been widely used for the identification of new viroids as well as a routine detection tool.

Keywords: Characteristic migration; Sequential PAGE; Silver staining; Urea denaturing gel.

MeSH terms

  • Electrophoresis, Polyacrylamide Gel
  • Nucleic Acid Conformation
  • Nucleic Acids
  • Plant Diseases
  • RNA, Viral / genetics
  • Viroids* / genetics

Substances

  • Nucleic Acids
  • RNA, Viral