Binding of a Pocket Factor to Hepatitis B Virus Capsids Changes the Rotamer Conformation of Phenylalanine 97

Viruses. 2021 Oct 20;13(11):2115. doi: 10.3390/v13112115.

Abstract

(1) Background: During maturation of the Hepatitis B virus, a viral polymerase inside the capsid transcribes a pre-genomic RNA into a partly double stranded DNA-genome. This is followed by envelopment with surface proteins inserted into a membrane. Envelopment is hypothetically regulated by a structural signal that reports the maturation state of the genome. NMR data suggest that such a signal can be mimicked by the binding of the detergent Triton X 100 to hydrophobic pockets in the capsid spikes. (2) Methods: We have used electron cryo-microscopy and image processing to elucidate the structural changes that are concomitant with the binding of Triton X 100. (3) Results: Our maps show that Triton X 100 binds with its hydrophobic head group inside the pocket. The hydrophilic tail delineates the outside of the spike and is coordinated via Lys-96. The binding of Triton X 100 changes the rotamer conformation of Phe-97 in helix 4, which enables a π-stacking interaction with Trp-62 in helix 3. Similar changes occur in mutants with low secretion phenotypes (P5T and L60V) and in a mutant with a pre-mature secretion phenotype (F97L). (4) Conclusion: Binding of Triton X 100 is unlikely to mimic structural maturation because mutants with different secretion phenotypes show similar structural responses.

Keywords: Hepatitis B Virus; Triton X 100; electron cryo-microscopy; envelopment; isothermal titration calorimetry; maturation signal; pocket factor; single strand blocking.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs
  • Capsid / chemistry*
  • Capsid / metabolism
  • DNA, Viral / chemistry
  • DNA, Viral / genetics
  • DNA, Viral / metabolism
  • Hepatitis B / virology*
  • Hepatitis B Core Antigens / chemistry
  • Hepatitis B Core Antigens / genetics
  • Hepatitis B Core Antigens / metabolism
  • Hepatitis B virus / chemistry
  • Hepatitis B virus / genetics
  • Hepatitis B virus / metabolism*
  • Humans
  • Hydrophobic and Hydrophilic Interactions
  • Models, Molecular
  • Phenylalanine / chemistry*
  • Phenylalanine / genetics
  • Phenylalanine / metabolism
  • Virion / chemistry
  • Virion / genetics
  • Virion / metabolism

Substances

  • DNA, Viral
  • Hepatitis B Core Antigens
  • Phenylalanine