Precision DNA Mixture Interpretation with Single-Cell Profiling

Genes (Basel). 2021 Oct 20;12(11):1649. doi: 10.3390/genes12111649.

Abstract

Wet-lab based studies have exploited emerging single-cell technologies to address the challenges of interpreting forensic mixture evidence. However, little effort has been dedicated to developing a systematic approach to interpreting the single-cell profiles derived from the mixtures. This study is the first attempt to develop a comprehensive interpretation workflow in which single-cell profiles from mixtures are interpreted individually and holistically. In this approach, the genotypes from each cell are assessed, the number of contributors (NOC) of the single-cell profiles is estimated, followed by developing a consensus profile of each contributor, and finally the consensus profile(s) can be used for a DNA database search or comparing with known profiles to determine their potential sources. The potential of this single-cell interpretation workflow was assessed by simulation with various mixture scenarios and empirical allele drop-out and drop-in rates, the accuracies of estimating the NOC, the accuracies of recovering the true alleles by consensus, and the capabilities of deconvolving mixtures with related contributors. The results support that the single-cell based mixture interpretation can provide a precision that cannot beachieved with current standard CE-STR analyses. A new paradigm for mixture interpretation is available to enhance the interpretation of forensic genetic casework.

Keywords: DNA forensics; DNA mixture; clustering algorithm; consensus profile; mixture interpretation; number of contributors; single-cell.

Publication types

  • Evaluation Study

MeSH terms

  • Algorithms
  • Alleles
  • Cluster Analysis
  • DNA / analysis*
  • DNA / chemistry
  • DNA / genetics
  • DNA Contamination
  • DNA Fingerprinting / methods
  • Forensic Genetics* / methods
  • Forensic Genetics* / trends
  • Genetic Techniques
  • Genotype
  • Humans
  • Microsatellite Repeats
  • Single-Cell Analysis / methods*

Substances

  • DNA