Determination of probability of causative pathogen in infectious keratitis using deep learning algorithm of slit-lamp images

Sci Rep. 2021 Nov 22;11(1):22642. doi: 10.1038/s41598-021-02138-w.

Abstract

Corneal opacities are important causes of blindness, and their major etiology is infectious keratitis. Slit-lamp examinations are commonly used to determine the causative pathogen; however, their diagnostic accuracy is low even for experienced ophthalmologists. To characterize the "face" of an infected cornea, we have adapted a deep learning architecture used for facial recognition and applied it to determine a probability score for a specific pathogen causing keratitis. To record the diverse features and mitigate the uncertainty, batches of probability scores of 4 serial images taken from many angles or fluorescence staining were learned for score and decision level fusion using a gradient boosting decision tree. A total of 4306 slit-lamp images including 312 images obtained by internet publications on keratitis by bacteria, fungi, acanthamoeba, and herpes simplex virus (HSV) were studied. The created algorithm had a high overall accuracy of diagnosis, e.g., the accuracy/area under the curve for acanthamoeba was 97.9%/0.995, bacteria was 90.7%/0.963, fungi was 95.0%/0.975, and HSV was 92.3%/0.946, by group K-fold validation, and it was robust to even the low resolution web images. We suggest that our hybrid deep learning-based algorithm be used as a simple and accurate method for computer-assisted diagnosis of infectious keratitis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aged
  • Algorithms
  • Corneal Opacity
  • Deep Learning*
  • Diagnostic Techniques, Ophthalmological
  • Female
  • Humans
  • Keratitis / diagnosis*
  • Keratitis / microbiology*
  • Keratitis / parasitology*
  • Keratitis / virology*
  • Male
  • Middle Aged
  • Ophthalmology / methods
  • Probability
  • Reproducibility of Results
  • Slit Lamp Microscopy / methods*
  • Slit Lamp*