The Shuttling Cascade in Lasso Peptide Benenodin-1 is Controlled by Non-Covalent Interactions

Chemistry. 2022 Jan 24;28(5):e202103615. doi: 10.1002/chem.202103615. Epub 2021 Dec 2.

Abstract

The lasso peptide benenodin-1, a naturally occurring and bacterially produced [1]rotaxane, undergoes a reversible zip tie-like motion under heat activation, in which a peptidic wheel stepwise translates along a molecular thread in a cascade of "tail/loop pulling" equilibria. Conformational and structural analyses of four translational isomers, in solution and in the gas phase, reveal that the equilibrium distribution is controlled by mechanical and non-covalent forces within the lasso peptide. Furthermore, each dynamic pulling step is accompanied by a major restructuring of the intramolecular hydrogen bonding network between wheel and thread, which affects the peptide's physico-chemical properties.

Keywords: lasso peptides; molecular switches; natural products; rotaxane; supramolecular chemistry.

MeSH terms

  • Hydrogen Bonding
  • Isomerism
  • Molecular Conformation
  • Peptides*
  • Rotaxanes*

Substances

  • Peptides
  • Rotaxanes