A novel panel of blood-based microRNAs capable of discrimination between benign breast disease and breast cancer at early stages

RNA Biol. 2021 Nov 12;18(sup2):747-756. doi: 10.1080/15476286.2021.1989218. Epub 2021 Nov 18.

Abstract

Breast cancer (BC) as a leading cause of cancer death among women, exhibits a wide range of genetic heterogeneity in affected individuals. Satisfactory management of BC depends on early diagnosis and proper monitoring of patients' response to therapy. In this study, we aimed to assess the relation between the expression patterns of blood-based microRNAs (miRNAs) with demographic characteristics of the patients with BC in an attempt to find novel diagnostic markers for BC with acceptable precision in clinical applications. To this end, we performed comprehensive statistical analysis of the data of the Cancer Genome Atlas (TCGA) database and the blood miRNome dataset (GSE31309). As a result, 21 miRNAs were selected for experimental verification by quantitative RT-PCR on blood samples of 70 BC patients and 60 normal individuals (without any lesions or benign breast diseases). Statistical one-way ANOVA revealed no significant difference in the blood levels of the selected miRNAs in BC patients compared to any lesions or benign breast diseases. However, the multi-marker panel consisting of hsa-miR-106b-5p, -126-3p, -140-3p, -193a-5p, and -10b-5p could detect early-stages of BC with 0.79 sensitivity, 0.86 specificity and 0.82 accuracy. Furthermore, this multi-marker panel showed the potential of detecting benign breast diseases from BC patients with 0.67 sensitivity, 0.80 specificity, and 0.74 accuracy. In conclusion, these data indicate that the present panel might be considered an asset in detecting benign breast disease and BC.

Keywords: MicroRNA biomarker; TCGA; blood-based microRNA; cancer detection; clinical bioinformatics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomarkers*
  • Biomarkers, Tumor
  • Breast Diseases / blood
  • Breast Diseases / diagnosis*
  • Breast Diseases / genetics*
  • Breast Neoplasms / blood
  • Breast Neoplasms / diagnosis*
  • Breast Neoplasms / genetics*
  • Circulating MicroRNA*
  • Diagnosis, Differential
  • Early Detection of Cancer
  • Female
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Liquid Biopsy / methods
  • MicroRNAs / blood
  • MicroRNAs / genetics*
  • Neoplasm Staging
  • Phosphatidylinositol 3-Kinases / metabolism
  • Prognosis
  • Proto-Oncogene Proteins c-akt / metabolism
  • ROC Curve
  • Real-Time Polymerase Chain Reaction
  • Sensitivity and Specificity
  • Signal Transduction

Substances

  • Biomarkers
  • Biomarkers, Tumor
  • Circulating MicroRNA
  • MicroRNAs
  • Proto-Oncogene Proteins c-akt

Grants and funding

This work was supported by the National cancer control charity fundation; Royan Institute; Tehran University of Medical Sciences and Health Services.