Detecting Phytophthora cinnamomi associated with dieback disease on Carya cathayensis using loop-mediated isothermal amplification

PLoS One. 2021 Nov 16;16(11):e0257785. doi: 10.1371/journal.pone.0257785. eCollection 2021.

Abstract

Chinese hickory (Carya cathayensis Sarg.) is an economically and ecologically important nut plant in China. Dieback and basal stem necrosis have been observed in the plants since 2016, and its recent spread has significantly affected plant growth and nut production. Therefore, a survey was conducted to evaluate the disease incidence at five sites in Linan County, China. The highest incidence was recorded at the Tuankou site at up to 11.39% in 2019. The oomycete, Phytophthora cinnamomi, was isolated from symptomatic plant tissue and plantation soil using baiting and selective media-based detection methods and identified. Artificial infection with the representative P. cinnamomi ST402 isolate produced vertically elongated discolorations in the outer xylem and necrotic symptoms in C. cathayensis seedlings in a greenhouse trial. Molecular detections based on loop-mediated isothermal amplification (LAMP) specific to P. cinnamomi ST402 were conducted. Result indicated that LAMP detection showed a high coherence level with the baiting assays for P. cinnamomi detection in the field. This study provides the evidence of existence of high-pathogenic P. cinnamomi in the C. cathayensis plantation soil in China and the insights into a convenient tool developed for conducting field monitoring of this aggressive pathogen.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Carya / microbiology*
  • Electron Transport Complex IV / genetics
  • Molecular Diagnostic Techniques / methods*
  • Nucleic Acid Amplification Techniques / methods*
  • Phylogeny
  • Phytophthora / cytology
  • Phytophthora / isolation & purification*
  • Phytophthora / pathogenicity
  • Plant Diseases / microbiology*
  • Plant Stems / microbiology
  • Seedlings / microbiology
  • Surveys and Questionnaires

Substances

  • Electron Transport Complex IV

Supplementary concepts

  • LAMP assay

Grants and funding

Financial support for this work was provided by grants from Zhejiang Key Research and Development Program of China (2019C0203002) awarded by Wang Y. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.