Spatial structure and oligomerization of viscotoxin A3 in detergent micelles: Implication for mechanisms of ion channel formation and membrane lysis

Biochem Biophys Res Commun. 2021 Dec 31:585:22-28. doi: 10.1016/j.bbrc.2021.11.022. Epub 2021 Nov 9.

Abstract

Thionins are the family of small (∼5 kDa) cationic cysteine-rich peptides involved in the immune response in plants. Viscotoxin A3 (VtA3) is the thionin from mistletoe (Viscum album) demonstrating antimicrobial and cytotoxic activity against cancer cells in vitro. VtA3 (charge +6) interacts with the membranes containing anionic lipids and forms cation-selective ion channels. Here we studied the VtA3 structure in membrane-mimicking media by NMR spectroscopy. Spatial structure of VtA3, consisting of a helical hairpin and a short β-sheet, was stable and did not undergo significant changes during micelle binding. VtA3 molecule bound with high affinity to the surface of zwitterionic dodecylphosphocholine (DPC) micelle by hydrophobic patch in the helical hairpin. Oligomerization of VtA3 was observed in the anionic micelles of sodium dodecylsulphate (SDS). No direct contacts between the peptide molecules were observed and the possible interfaces of detergent-assisted oligomerization were revealed. The data obtained suggest that the VtA3 membrane activity, depending on the concentration, obeys the 'toroidal' pore model or the 'carpet' mechanism. The model of the membrane disrupting complex, which explains the ion channel formation in the partially anionic membranes, was proposed.

Keywords: Antimicrobial peptide; Detergent micelles; Membrane activity; NMR spatial structure; Oligomerization; Thionin; Viscotoxin.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Cell Membrane / chemistry*
  • Cell Membrane / metabolism
  • Detergents / chemistry*
  • Ion Channels / chemistry*
  • Ion Channels / metabolism
  • Magnetic Resonance Spectroscopy / methods
  • Micelles*
  • Models, Molecular
  • Plant Leaves / chemistry
  • Plant Proteins / chemistry*
  • Plant Proteins / genetics
  • Plant Proteins / metabolism
  • Plant Stems / chemistry
  • Protein Binding
  • Protein Conformation
  • Protein Multimerization
  • Sequence Homology, Amino Acid
  • Sodium Dodecyl Sulfate / chemistry*
  • Viscum album / chemistry*

Substances

  • Detergents
  • Ion Channels
  • Micelles
  • Plant Proteins
  • viscotoxin A3, Viscum album
  • Sodium Dodecyl Sulfate