Complete chloroplast genome of Gypsophila oldhamiana Miq. (Caryophyllales: Caryophyllaceae)

Ji Ran Jeong; Hyun Jo Koo; Heesu Yun; Hyang Sook Chun; Sang-Il Han; Gyoungju Nah

doi:10.1080/23802359.2021.1997126

Complete chloroplast genome of Gypsophila oldhamiana Miq. (Caryophyllales: Caryophyllaceae)

Mitochondrial DNA B Resour. 2021 Nov 10;6(12):3381-3382. doi: 10.1080/23802359.2021.1997126. eCollection 2021.

Authors

Ji Ran Jeong¹, Hyun Jo Koo¹, Heesu Yun¹, Hyang Sook Chun², Sang-Il Han³, Gyoungju Nah¹

Affiliations

¹ Genome Analysis Center at National Instrumentation Center for Environmental Management, Seoul National University, Seoul, Republic of Korea.
² Department of Food Science and Technology, Chung-Ang University, Ahnsung, Republic of Korea.
³ Medicinal Herb Garden, College of Pharmacy, Seoul National University, Goyang, Republic of Korea.

Abstract

The complete chloroplast genome sequence of Gypsophila oldhamiana Miq., a species of the Caryophyllaceae family, was assembled and analyzed from the de novo assembly of Illumina paired-end sequencing data. The total length of the chloroplast genome of G. oldhamiana was 152,675 bp including a large single-copy (LSC) region of 83,552 bp, a small single-copy (SSC) region of 17,349 bp, and a pair of identical inverted repeat regions (IRs) of 25,887 bp. The genome possessed a total of 130 genes, including 85 protein-coding genes, 37 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. The phylogenetic analysis of G. oldhamiana with 14 related species discovered the closest taxonomical relationship with Gypsophila vaccaria voucher in the Caryophyllaceae family.

Keywords: Gypsophila oldhamiana; caryophyllaceae; complete chloroplast genome; next generation sequencing.

Grants and funding

This research was supported by Ministry of Food and Drug Safety, Republic of Korea in 2021 [17162MFDS065].