RNA in formation and regulation of transcriptional condensates

RNA. 2022 Jan;28(1):52-57. doi: 10.1261/rna.078997.121. Epub 2021 Nov 12.

Abstract

Macroscopic membraneless organelles containing RNA such as the nucleoli, germ granules, and the Cajal body have been known for decades. These biomolecular condensates are liquid-like bodies that can be formed by a phase transition. Recent evidence has revealed the presence of similar microscopic condensates associated with the transcription of genes. This brief article summarizes thoughts about the importance of condensates in the regulation of transcription and how RNA molecules, as components of such condensates, control the synthesis of RNA. Models and experimental data suggest that RNAs from enhancers facilitate the formation of a condensate that stabilizes the binding of transcription factors and accounts for a burst of transcription at the promoter. Termination of this burst is pictured as a nonequilibrium feedback loop where additional RNA destabilizes the condensate.

Keywords: RNA; condensate; intrinsically disordered domains; phase separation; transcription; transcription factors.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Binding Sites
  • Biomolecular Condensates / chemistry*
  • Biomolecular Condensates / metabolism
  • Cell Compartmentation
  • Cell Nucleolus / chemistry
  • Cell Nucleolus / metabolism
  • Coiled Bodies / chemistry
  • Coiled Bodies / metabolism
  • DNA / chemistry*
  • DNA / metabolism
  • Eukaryotic Cells / chemistry
  • Eukaryotic Cells / metabolism
  • Feedback, Physiological
  • Germ Cell Ribonucleoprotein Granules / chemistry
  • Germ Cell Ribonucleoprotein Granules / metabolism
  • Humans
  • Macromolecular Substances / chemistry
  • Macromolecular Substances / metabolism
  • Promoter Regions, Genetic
  • Protein Binding
  • RNA / chemistry*
  • RNA / metabolism
  • RNA-Binding Proteins / chemistry*
  • RNA-Binding Proteins / metabolism
  • Transcription Factors / chemistry*
  • Transcription Factors / metabolism
  • Transcription, Genetic*

Substances

  • Macromolecular Substances
  • RNA-Binding Proteins
  • Transcription Factors
  • RNA
  • DNA