Dihydrofolate Reductase Inhibitors: The Pharmacophore as a Guide for Co-Crystal Screening

Molecules. 2021 Nov 6;26(21):6721. doi: 10.3390/molecules26216721.

Abstract

In this work, co-crystal screening was carried out for two important dihydrofolate reductase (DHFR) inhibitors, trimethoprim (TMP) and pyrimethamine (PMA), and for 2,4-diaminopyrimidine (DAP), which is the pharmacophore of these active pharmaceutical ingredients (API). The isomeric pyridinecarboxamides and two xanthines, theophylline (THEO) and caffeine (CAF), were used as co-formers in the same experimental conditions, in order to evaluate the potential for the pharmacophore to be used as a guide in the screening process. In silico co-crystal screening was carried out using BIOVIA COSMOquick and experimental screening was performed by mechanochemistry and supported by (solid + liquid) binary phase diagrams, infrared spectroscopy (FTIR) and X-ray powder diffraction (XRPD). The in silico prediction of low propensities for DAP, TMP and PMA to co-crystallize with pyridinecarboxamides was confirmed: a successful outcome was only observed for DAP + nicotinamide. Successful synthesis of multicomponent solid forms was achieved for all three target molecules with theophylline, with DAP co-crystals revealing a greater variety of stoichiometries. The crystalline structures of a (1:2) TMP:THEO co-crystal and of a (1:2:1) DAP:THEO:ethyl acetate solvate were solved. This work demonstrated the possible use of the pharmacophore of DHFR inhibitors as a guide for co-crystal screening, recognizing some similar trends in the outcome of association in the solid state and in the molecular aggregation in the co-crystals, characterized by the same supramolecular synthons.

Keywords: 2,4-diaminopyrimidine; caffeine; co-crystal screening; dihydrofolate reductase inhibitors; pharmacophore; pyridinecarboxamides; pyrimethamine; theophylline; trimethoprim.

MeSH terms

  • Crystallography, X-Ray
  • Drug Evaluation, Preclinical
  • Enzyme Inhibitors / chemistry
  • Enzyme Inhibitors / pharmacology*
  • Humans
  • Models, Molecular
  • Molecular Structure
  • Pyrimethamine / chemistry
  • Pyrimethamine / pharmacology*
  • Pyrimidines / chemistry
  • Pyrimidines / pharmacology*
  • Tetrahydrofolate Dehydrogenase / metabolism*
  • Trimethoprim / chemistry
  • Trimethoprim / pharmacology*

Substances

  • Enzyme Inhibitors
  • Pyrimidines
  • 2,4-diaminopyrimidine
  • Trimethoprim
  • Tetrahydrofolate Dehydrogenase
  • Pyrimethamine