Processing human lymph node samples for single-cell assays

STAR Protoc. 2021 Oct 21;2(4):100914. doi: 10.1016/j.xpro.2021.100914. eCollection 2021 Dec 17.

Abstract

Most non-Hodgkin's lymphomas grow exclusively in the lymph node compartment protected by the tumor microenvironment. To better understand the cellular heterogeneity and the complex interaction between malignant and non-malignant cells, experiments with primary, patient-derived samples are often indispensable. Here, we describe a time-efficient but gentle protocol to process human lymph node samples. This protocol avoids enzymatic or mechanical stress and was optimized for the purpose of generating single-cell suspension suitable for delicate assays, such as single-cell RNA sequencing. For complete details on the use and execution of this protocol, please refer to Roider et al. (2020).

Keywords: Cancer; Cell isolation; Flow Cytometry/Mass Cytometry; Health Sciences; Single Cell.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cells, Cultured
  • Flow Cytometry
  • Humans
  • Lymph Nodes* / cytology
  • Lymph Nodes* / pathology
  • Lymphoma, Non-Hodgkin
  • Single-Cell Analysis / methods*