The Identification of Blood Biomarkers of Chronic Neuropathic Pain by Comparative Transcriptomics

Neuromolecular Med. 2022 Sep;24(3):320-338. doi: 10.1007/s12017-021-08694-8. Epub 2021 Nov 5.

Abstract

In this study, we recruited 50 chronic pain (neuropathic and nociceptive) and 43 pain-free controls to identify specific blood biomarkers of chronic neuropathic pain (CNP). Affymetrix microarray was carried out on a subset of samples selected 10 CNP and 10 pain-free control participants. The most significant genes were cross-validated using the entire dataset by quantitative real-time PCR (qRT-PCR). In comparative analysis of controls and CNP patients, WLS (P = 4.80 × 10-7), CHPT1 (P = 7.74 × 10-7) and CASP5 (P = 2.30 × 10-5) were highly significant, whilst FGFBP2 (P = 0.00162), STAT1 (P = 0.00223), FCRL6 (P = 0.00335), MYC (P = 0.00335), XCL2 (P = 0.0144) and GZMA (P = 0.0168) were significant in all CNP patients. A three-arm comparative analysis was also carried out with control as the reference group and CNP samples differentiated into two groups of high and low S-LANSS score using a cut-off of 12. STAT1, XCL2 and GZMA were not significant but KIR3DL2 (P = 0.00838), SH2D1B (P = 0.00295) and CXCR31 (P = 0.0136) were significant in CNP high S-LANSS group (S-LANSS score > 12), along with WLS (P = 8.40 × 10-5), CHPT1 (P = 7.89 × 10-4), CASP5 (P = 0.00393), FGFBP2 (P = 8.70 × 10-4) and FCRL6 (P = 0.00199), suggesting involvement of immune pathways in CNP mechanisms. None of the genes was significant in CNP samples with low (< 12) S-LANSS score. The area under the receiver operating characteristic (AUROC) analysis showed that combination of MYC, STAT1, TLR4, CASP5 and WLS gene expression could be potentially used as a biomarker signature of CNP (AUROC - 0.852, (0.773, 0.931 95% CI)).

Keywords: AUROC curve analysis; Affymetrix microarray; Biomarkers; Chronic pain; Inflammation; Neuropathic.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomarkers* / blood
  • Case-Control Studies
  • Chronic Pain* / blood
  • Chronic Pain* / diagnosis
  • Chronic Pain* / genetics
  • Humans
  • Neuralgia* / blood
  • Neuralgia* / diagnosis
  • Neuralgia* / genetics
  • Transcriptome

Substances

  • Biomarkers