TOC1 clock protein phosphorylation controls complex formation with NF-YB/C to repress hypocotyl growth

EMBO J. 2021 Dec 15;40(24):e108684. doi: 10.15252/embj.2021108684. Epub 2021 Nov 2.

Abstract

Plant photoperiodic growth is coordinated by interactions between circadian clock and light signaling networks. How post-translational modifications of clock proteins affect these interactions to mediate rhythmic growth remains unclear. Here, we identify five phosphorylation sites in the Arabidopsis core clock protein TIMING OF CAB EXPRESSION 1 (TOC1) which when mutated to alanine eliminate detectable phosphorylation. The TOC1 phospho-mutant fails to fully rescue the clock, growth, and flowering phenotypes of the toc1 mutant. Further, the TOC1 phospho-mutant shows advanced phase, a faster degradation rate, reduced interactions with PHYTOCHROME-INTERACTING FACTOR 3 (PIF3) and HISTONE DEACETYLASE 15 (HDA15), and poor binding at pre-dawn hypocotyl growth-related genes (PHGs), leading to a net de-repression of hypocotyl growth. NUCLEAR FACTOR Y subunits B and C (NF-YB/C) stabilize TOC1 at target promoters, and this novel trimeric complex (NF-TOC1) acts as a transcriptional co-repressor with HDA15 to inhibit PIF-mediated hypocotyl elongation. Collectively, we identify a molecular mechanism suggesting how phosphorylation of TOC1 alters its phase, stability, and physical interactions with co-regulators to precisely phase PHG expression to control photoperiodic hypocotyl growth.

Keywords: NUCLEAR FACTOR Y; TOC1; circadian; phosphorylation; photomorphogenesis.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arabidopsis / genetics
  • Arabidopsis / growth & development*
  • Arabidopsis / metabolism
  • Arabidopsis Proteins / chemistry
  • Arabidopsis Proteins / genetics*
  • Arabidopsis Proteins / metabolism
  • Basic Helix-Loop-Helix Transcription Factors / metabolism
  • CCAAT-Binding Factor / metabolism*
  • Gene Expression Regulation, Plant
  • Histone Deacetylases / metabolism
  • Hypocotyl / growth & development
  • Hypocotyl / metabolism
  • Mutation*
  • Phosphorylation
  • Proteolysis
  • Signal Transduction
  • Transcription Factors / chemistry
  • Transcription Factors / genetics*
  • Transcription Factors / metabolism

Substances

  • Arabidopsis Proteins
  • Basic Helix-Loop-Helix Transcription Factors
  • CCAAT-Binding Factor
  • PIF3 protein, Arabidopsis
  • TOC1 protein, Arabidopsis
  • Transcription Factors
  • HDA15 protein, Arabidopsis
  • Histone Deacetylases