A novel wastewater-based epidemiology indexing method predicts SARS-CoV-2 disease prevalence across treatment facilities in metropolitan and regional populations

Sci Rep. 2021 Nov 1;11(1):21368. doi: 10.1038/s41598-021-00853-y.

Abstract

There is a need for wastewater based epidemiological (WBE) methods that integrate multiple, variously sized surveillance sites across geographic areas. We developed a novel indexing method, Melvin's Index, that provides a normalized and standardized metric of wastewater pathogen load for qPCR assays that is resilient to surveillance site variation. To demonstrate the utility of Melvin's Index, we used qRT-PCR to measure SARS-CoV-2 genomic RNA levels in influent wastewater from 19 municipal wastewater treatment facilities (WWTF's) of varying sizes and served populations across the state of Minnesota during the Summer of 2020. SARS-CoV-2 RNA was detected at each WWTF during the 20-week sampling period at a mean concentration of 8.5 × 104 genome copies/L (range 3.2 × 102-1.2 × 109 genome copies/L). Lag analysis of trends in Melvin's Index values and clinical COVID-19 cases showed that increases in indexed wastewater SARS-CoV-2 levels precede new clinical cases by 15-17 days at the statewide level and by up to 25 days at the regional/county level. Melvin's Index is a reliable WBE method and can be applied to both WWTFs that serve a wide range of population sizes and to large regions that are served by multiple WWTFs.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • COVID-19 / epidemiology*
  • COVID-19 / virology
  • Genome, Viral
  • Humans
  • Minnesota / epidemiology
  • Prevalence
  • Prognosis
  • RNA, Viral / genetics
  • Reverse Transcriptase Polymerase Chain Reaction / methods
  • Risk Factors
  • SARS-CoV-2 / genetics*
  • Suburban Population*
  • Urban Population*
  • Waste Disposal Facilities*
  • Wastewater / virology*
  • Wastewater-Based Epidemiological Monitoring*
  • Water Purification*

Substances

  • RNA, Viral
  • Waste Water