PMLB v1.0: an open-source dataset collection for benchmarking machine learning methods

Bioinformatics. 2022 Jan 12;38(3):878-880. doi: 10.1093/bioinformatics/btab727.

Abstract

Motivation: Novel machine learning and statistical modeling studies rely on standardized comparisons to existing methods using well-studied benchmark datasets. Few tools exist that provide rapid access to many of these datasets through a standardized, user-friendly interface that integrates well with popular data science workflows.

Results: This release of PMLB (Penn Machine Learning Benchmarks) provides the largest collection of diverse, public benchmark datasets for evaluating new machine learning and data science methods aggregated in one location. v1.0 introduces a number of critical improvements developed following discussions with the open-source community.

Availability and implementation: PMLB is available at https://github.com/EpistasisLab/pmlb. Python and R interfaces for PMLB can be installed through the Python Package Index and Comprehensive R Archive Network, respectively.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Benchmarking*
  • Machine Learning
  • Models, Statistical
  • Software*