Hybridization and polyploidization effects on LTR-retrotransposon activation in potato genome

J Plant Res. 2022 Jan;135(1):81-92. doi: 10.1007/s10265-021-01354-9. Epub 2021 Oct 21.

Abstract

Hybridization and polyploidization are major forces in plant evolution and potatoes are not an exception. It is proposed that the proliferation of Long Terminal Repeat-retrotransposons (LTR-RT) is related to genome reorganization caused by hybridization and/or polyploidization. The main purpose of the present work was to evaluate the effect of interspecific hybridization and polyploidization on the activation of LTR-RT. We evaluated the proliferation of putative active LTR-RT in a diploid hybrid between the cultivated potato Solanum tuberosum and the wild diploid potato species S. kurtzianum, allotetraploid lines derived from this interspecific hybrid and S. kurtzianum autotetraploid lines (ktz-autotetraploid) using the S-SAP (sequence-specific amplified polymorphism) technique and normalized copy number determination by qPCR. Twenty-nine LTR-RT copies were activated in the hybrid and present in the allotetraploid lines. Major LTR-RT activity was detected in Copia-27, Copia-12, Copia-14 and, Gypsy-22. According to our results, LTR-RT copies were activated principally in the hybrid, there was no activation in allotetraploid lines and only one copy was activated in the autotetraploid.

Keywords: Allotetraploid; Autotetraploid; Hybridization; Long terminal repeat retrotransposons; Solanum kurtzianum; Solanum tuberosum.

MeSH terms

  • Genome, Plant / genetics
  • Hybridization, Genetic
  • Phylogeny
  • Retroelements* / genetics
  • Solanum tuberosum* / genetics
  • Terminal Repeat Sequences / genetics

Substances

  • Retroelements