Nanopore Genome Sequencing and Variant Analysis of the Susceptible Candida auris Strain L1537/2020, Salvador, Brazil

Mycopathologia. 2021 Dec;186(6):883-887. doi: 10.1007/s11046-021-00593-7. Epub 2021 Oct 20.

Abstract

Candida auris has been reported worldwide, but only in December 2020, the first strain from a COVID-19 patient in Brazil was isolated. Here, we describe the genome sequence of this susceptible C. auris strain and performed variant analysis of the genetic relatedness with strains from other geographic localities.

Keywords: Candida auris; De novo genome assembly; Emerging pathogen; Nanopore sequencing; Variant calling.

MeSH terms

  • Antifungal Agents
  • Brazil
  • COVID-19*
  • Candida / genetics
  • Candidiasis*
  • Humans
  • Microbial Sensitivity Tests
  • Nanopores*
  • SARS-CoV-2

Substances

  • Antifungal Agents