Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae)

Mitochondrial DNA B Resour. 2021 Oct 7;6(11):3134-3136. doi: 10.1080/23802359.2021.1985403. eCollection 2021.

Abstract

We report complete chloroplast genome (plastome) sequences of Stylidium debile (150,105 bp) and Stylidium petiolare (150,998 bp). Both plastomes had the typical quadripartite structure, with large single-copy (LSC) and small single-copy (SSC) regions separated by two inverted repeat (IR) regions. Both plastomes have lost the rps19 and ycf15 CDS genes, and had infA-like, rps22-like, and rps7-like pseudogenes. Moreover, IR regions were expanded by having trnH GUG tRNA and the rps22-like pseudogene. Plastome phylogenomic analyses showed that the two Stylidium species formed a monophyletic clade (BS = 100), sister to the Argophyllaceae (BS = 86/83). Sequence differences between the two Stylidium plastomes were 5011 sites, including 2166 variable sites and 2845 indels, with the petA-psbJ spacer the most variable region, followed by the trnK UUU-matK intron and trnG UUG-rps16 spacer.

Keywords: Chloroplast genome; Stylidiaceae; Stylidium debile; Stylidium petiolare; plastome.

Grants and funding

This study was supported by grants from the Large-scale Scientific Facilities of the Chinese Academy of Sciences [2017-LSFGBOWS-02].